ConnectomeViewer Documentation

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Connectome File Format Datasets

Dataset 1: Human cortex connectivity dataset

Reference: Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, et al. 2008 Mapping the Structural Core of Human Cerebral Cortex. PLoS Biol 6(7): e159. doi:10.1371/journal.pbio.0060159
Connection matrices and anatomical labels for areas of the human cerebral cortex. These data were generated by DSI (diffusion spectrum imaging) of 5 participants. Participant A was scanned twice. Note that these connection matrices are weighted and symmetric (undirected).

Dataset 2: Single subject connectivity

This file contains connectivity data for a single subject as done with the Connectome Mapping Toolbox developed at EPFL.

Dataset 3: Freesurfer Atlas with Average Connectivity

This atlas is also known as the 'Desikan-Killiany' cortical atlas. It is a gyral based atlas: ie, a gyrus was defined as running between the bottoms of two adjacent sulci. That is, a gyrus includes the part visible on the pial view + adjacent banks of the sulci limiting this gyrus.

The atlas is enriched by an avarage connectivity dataset: Parameters: DSI 258 diffusion gradients over a hemisphere with bmax=8000 s/mm2 Voxel size 2.2 x 2.2 x 3 mm3 Data processed according to Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, et al. 2008 Mapping the Structural Core of Human Cerebral Cortex. PLoS Biol 6(7): e159. doi:10.1371journal.pbio.0060159 20 healthy subjects aged between 22 and 33 years, males and females

Dataset 4: Macaque connectivity Right Hemisphere

Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, et al. 2008 Mapping the Structural Core of Human Cerebral Cortex. PLoS Biol 6(7): e159. doi:10.1371/journal.pbio.0060159
The macaque dataset used for the study. See references.